Similar HOG based on pairwise relations to

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

HOG:E0755526.2n with 69 members (cerebellin)

Chordata / Vertebrata / Gnathostomata / Euteleostomi / Sarcopterygii / Tetrapoda /

Completeness score: 0.59

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This HOG has 58 similar HOGs:

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Rank	HOG ID	Shared orthologs	HOG size	Description
1	HOG:E0755526	122	794	cerebellin
2	HOG:E0671965	77	2	-
3	HOG:E0507621.1c	64	1	Derived by automated computational analysis using gene prediction method Gnomon
4	HOG:E0668317	61	2	-
5	HOG:E0755526.2i	58	44	cerebellin
6	HOG:E0511974	50	2	complement C1q-like protein
7	HOG:E0513367.1a	46	1	hypothetical protein
8	HOG:E0519325.4i	45	1	complement c1q-like protein
9	HOG:E0515260.1a.1c	36	1	Derived by automated computational analysis using gene prediction method Gnomon
10	HOG:E0540397.1c	33	1	Derived by automated computational analysis using gene prediction method Gnomon
11	HOG:E0515209	28	2	-
12	HOG:E0519325.4l.2a	20	1	complement c1q-like protein
13	HOG:E0519325.4g	20	1	complement c1q-like protein
14	HOG:E0519391.2d	17	4	complement C1q-like protein
15	HOG:E0519391	15	14	complement C1q-like protein
16	HOG:E0766466	11	2	-
17	HOG:E0508537.1b	10	1	Derived by automated computational analysis using gene prediction method Gnomon
18	HOG:E0507108.1b	10	1	Derived by automated computational analysis using gene prediction method Gnomon
19	HOG:E0755526.2r	8	43	cerebellin
20	HOG:E0536646	7	15	Derived by automated computational analysis using gene prediction method Gnomon
21	HOG:E0775188.1a	6	1	Complement C1q tumor necrosis factor-related protein 4-like
22	HOG:E0519325.1p	6	1	complement c1q-like protein
23	HOG:E0509556.2d	5	1	Derived by automated computational analysis using gene prediction method Gnomon
24	HOG:E0755526.2q	4	154	cerebellin
25	HOG:E0755526.2i.11b	4	2	cerebellin

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